.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.15.
.TH BAMCLEANHEADER.PY "1" "June 2020" "bamcleanheader.py 0.0.1+git20170413.ccd079d" "User Commands"
.SH NAME
bamcleanheader.py \- remove illegal and malformed fields from a BAM file's header
.SH SYNOPSIS
.B bamcleanheader.py
[\-h] [\-S] [input [input ...]]
.SH DESCRIPTION
remove illegal and malformed fields from a BAM file's header
.SH OPTIONS
.SS "positional arguments:"
.TP
input
SAM/BAM file to inject header lines into. If '\-' or absent then defaults to stdin.
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-S\fR, \fB\-\-is_sam\fR
input is SAM
.SH AUTHOR
 This manpage was written by Andreas Tille for the Debian distribution and
 can be used for any other usage of the program.