.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.2.
.TH EIGER2CRYSALIS "1" "November 2022" "eiger2crysalis 0.14.0" "User Commands"
.SH NAME
eiger2crysalis \- Portable image converter based on FabIO library
to export Eiger frames (including te one from LImA)
to a set of esperanto frames which can be imported 
into CrysalisPro.
.SH DESCRIPTION
usage: eiger2crysalis [\-h] [\-V] [\-v] [\-\-debug] [\-l] [\-o OUTPUT] [\-O OFFSET]
.TP
[\-D DUMMY] [\-\-dry\-run] [\-\-calc\-mask] [\-e ENERGY]
[\-w WAVELENGTH] [\-d DISTANCE] [\-b BEAM BEAM]
[\-\-alpha ALPHA] [\-\-kappa KAPPA] [\-\-phi PHI]
[\-\-omega OMEGA] [\-\-theta THETA] [\-\-rotation ROTATION]
[\-\-transpose] [\-\-flip\-ud] [\-\-flip\-lr]
[IMAGE ...]
.PP
Portable image converter based on FabIO library to export Eiger frames
(including te one from LImA) to a set of esperanto frames which can be
imported into CrysalisPro.
.SS "positional arguments:"
.TP
IMAGE
File with input images
.SS "options:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-V\fR, \fB\-\-version\fR
output version and exit
.TP
\fB\-v\fR, \fB\-\-verbose\fR
show information for each conversions
.TP
\fB\-\-debug\fR
show debug information
.SS "main arguments:"
.TP
\fB\-l\fR, \fB\-\-list\fR
show the list of available formats and exit
.TP
\fB\-o\fR OUTPUT, \fB\-\-output\fR OUTPUT
output directory and filename template
.TP
\fB\-O\fR OFFSET, \fB\-\-offset\fR OFFSET
index offset, CrysalisPro likes indexes to start at 1,
Python starts at 0
.TP
\fB\-D\fR DUMMY, \fB\-\-dummy\fR DUMMY
Set masked values to this dummy value
.SS "optional behaviour arguments:"
.TP
\fB\-\-dry\-run\fR
do everything except modifying the file system
.TP
\fB\-\-calc\-mask\fR
Generate a mask from pixels marked as invalid. Off by
default since it takes time
.SS "Experimental setup options:"
.TP
\fB\-e\fR ENERGY, \fB\-\-energy\fR ENERGY
Energy of the incident beam in keV
.TP
\fB\-w\fR WAVELENGTH, \fB\-\-wavelength\fR WAVELENGTH
Wavelength of the incident beam in ??
.TP
\fB\-d\fR DISTANCE, \fB\-\-distance\fR DISTANCE
Detector distance in millimeters
.TP
\fB\-b\fR BEAM BEAM, \fB\-\-beam\fR BEAM BEAM
Direct beam in pixels x, y
.SS "Goniometer setup:"
.TP
\fB\-\-alpha\fR ALPHA
Goniometer angle alpha value in deg. Constant, angle
between kappa/omega.
.TP
\fB\-\-kappa\fR KAPPA
Goniometer angle kappa value in deg or formula
f(index).
.TP
\fB\-\-phi\fR PHI
Goniometer angle phi value in deg. or formula
f(index). Inner\-most rotation.
.TP
\fB\-\-omega\fR OMEGA
Goniometer angle omega value in deg. or formula
f(index). Outer\-most rotation.
.TP
\fB\-\-theta\fR THETA
Goniometer angle theta value in deg. or formula
f(index). Tilt angle of the detector.
.SS "Image preprocessing (Important: applied in this order!):"
.TP
\fB\-\-rotation\fR ROTATION
Rotate the initial image by this value in degrees.
Must be a multiple of 90??. By default 180 deg (flip_up
with origin=lower and flip_lr because the image is
seen from the sample).
.TP
\fB\-\-transpose\fR
Flip the x/y axis
.TP
\fB\-\-flip\-ud\fR
Flip the image upside\-down
.TP
\fB\-\-flip\-lr\fR
Flip the image left\-right
.PP
return codes: 0 means a success. 1 means the conversion contains a failure, 2
means there was an error in the arguments