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SUBREAD-FULLSCAN(1) User Commands SUBREAD-FULLSCAN(1)

NAME

subread-fullscan - scans the entire genome and reports all matches of a specified sequence

USAGE

subread-fullscan [options] -i <index_name> <read_string>

Required arguments:

-i <string>
Base name of the index.
read_string
The read bases.

Optional arguments:

-m <float>
The minimum fraction of matched bases in the read, 0.8 by default
February 2020 subread-fullscan 2.0.0+dfsg-1~bpo10+1