.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.1.
.TH KRAKEN-MPA-REPORT "1" "September 2015" "kraken-mpa-report 0.10.5~beta" "User Commands"
.SH NAME
kraken-mpa-report \- assigning taxonomic labels to short DNA sequences
.SH SYNOPSIS
.B kraken-mpa-report
[\fI\,--db KRAKEN_DB_NAME\/\fR] [\fI\,options\/\fR] \fI\,<kraken output file(s)>\/\fR
.SH OPTIONS
.TP
\fB\-\-db\fR NAME
Name of Kraken database
(default: none)
.TP
\fB\-\-show\-zeros\fR
Display taxa even if they lack a read in any sample
.TP
\fB\-\-header\-line\fR
Display a header line indicating sample IDs
(sample IDs are the filenames)
.TP
\fB\-\-intermediate\-ranks\fR
Display taxa not at the standard ranks with x__ prefix