.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.46.4.
.TH CMPH5TOOLS "1" "August 2015" "cmph5tools 0.8.0" "User Commands"
.SH NAME
cmph5tools \- toolkit for command-line tools associated with cmp.h5 file processing
.SH SYNOPSIS
.B cmph5tools
[\-h] [\-\-verbose] [\-\-version] [\-\-profile] [\-\-debug]
{select,merge,sort,equal,summarize,stats,listMetrics,validate}
\&...
.SH OPTIONS
.SS "positional arguments:"
.IP
{select,merge,sort,equal,summarize,stats,listMetrics,validate}
.TP
select
Create new cmp.h5 files from selections of
input.cmp.h5
.TP
merge
Merge input.cmp.h5 files into out.cmp.h5
.TP
sort
Sort input.cmp.h5 file
.TP
equal
Compare two cmp.h5 files for equivalence
.TP
summarize
Summarize contents of cmp.h5 files
.TP
stats
Compute statistics from input.cmp.h5
.TP
listMetrics
List available metrics
.TP
validate
Validate input.cmp.h5
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-verbose\fR, \fB\-v\fR
Set the verbosity level (default: None)
.TP
\fB\-\-version\fR
show program's version number and exit
.TP
\fB\-\-profile\fR
Print runtime profile at exit (default: False)
.TP
\fB\-\-debug\fR
Catch exceptions in debugger (requires ipdb) (default:
False)
.SH SEE ALSO
.BR bash5tools (1)