.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.5.
.TH ANTSJACOBIAN "1" "October 2017" "ANTSJacobian 2.2.0" "User Commands"
.SH NAME
ANTSJacobian \- part of ANTS registration suite
.SH SYNOPSIS
.B ANTSJacobian
\fI\,ImageDim gWarp outfile uselog maskfn normbytotalbool projectionvector\/\fR
.SH DESCRIPTION
WARNING! ANTSJacobian may not be working correctly, see CreateJacobianDeterminantImage for an alternative method
.IP
for example
ANTSJacobian 3  myWarp.nii   Output  1   templatebrainmask.nii   1 1x0
the last 1 normalizes the jacobian by the total in the mask.  use this to adjust for head size. 1x0 will project the warp along direction 1,0 \fB\-\-\-\fR don't add this option if you dont want to do this