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alignment-chop-internal(1) alignment-chop-internal(1)

NAME

alignment-chop-internal - Remove ancestral sequences from an alignment.

SYNOPSIS

alignment-chop-internal [OPTIONS] < alignments-file

DESCRIPTION

Remove ancestral sequences from an alignment.

ALLOWED OPTIONS:

produce help message
file with sequences and initial alignment
set to 'Codons' to prefer codon alphabets
file with tree that specifies leaves to keep
number of sequences to keep

REPORTING BUGS:

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

Benjamin Redelings.

Feb 2018