table of contents
| mia-2dfluid(1) | General Commands Manual | mia-2dfluid(1) |
NAME¶
mia-2dfluid - Fluid dynamic 2D registration
SYNOPSIS¶
mia-2dfluid -i <in-image> -r <ref-image> [options]
DESCRIPTION¶
mia-2dfluid This program is used for non-rigid registration based on fluid dynamics. For reference see
It uses SSD as the sole registration criterion.
OPTIONS¶
File-IO¶
- -i --in-image=(required, input); io
- input (test) image to be registered
For supported file types see PLUGINS:2dimage/io - -r --ref-image=(required, input); io
- reference image
For supported file types see PLUGINS:2dimage/io - -o --out-transformation=(output); io
- output transformation comprising the registration
For supported file types see PLUGINS:2dvf/io - -d --out-image=(output); io
- output image deformed according to the transformation
For supported file types see PLUGINS:2dimage/io
Help & Info¶
- -V --verbose=warning
- verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
trace ‐ Function call trace
debug ‐ Debug output
info ‐ Low level messages
message ‐ Normal messages
warning ‐ Warnings
fail ‐ Report test failures
error ‐ Report errors
fatal ‐ Report only fatal errors
- --copyright
- print copyright information
- -h --help
- print this help
- -? --usage
- print a short help
- --version
- print the version number and exit
Processing¶
- --threads=-1
- Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
Registration parameters¶
- -m --mgstart=16
- multigrid start size
- -e --epsilon=0.001
- optimization breaking condition
- --mu=1
- elasticity parameter
- --lambda=1
- elasticity parameter
- --elastic
- use elastic registration
PLUGINS: 2dimage/io¶
- bmp
- BMP 2D-image input/output support. The plug-in supports reading and writing of binary images and 8-bit gray scale images. read-only support is provided for 4-bit gray scale images. The color table is ignored and the pixel values are taken as literal gray scale values.
Recognized file extensions: .BMP, .bmp
Supported element types:
binary data, unsigned 8 bit
- datapool
- Virtual IO to and from the internal data pool
Recognized file extensions: .@
- dicom
- 2D image io for DICOM
Recognized file extensions: .DCM, .dcm
Supported element types:
signed 16 bit, unsigned 16 bit
- exr
- a 2dimage io plugin for OpenEXR images
Recognized file extensions: .EXR, .exr
Supported element types:
unsigned 32 bit, floating point 32 bit
- jpg
- a 2dimage io plugin for jpeg gray scale images
Recognized file extensions: .JPEG, .JPG, .jpeg,
.jpg
Supported element types:
unsigned 8 bit
- png
- a 2dimage io plugin for png images
Recognized file extensions: .PNG, .png
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit
- raw
- RAW 2D-image output support
Recognized file extensions: .RAW, .raw
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit,
unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit,
floating point 64 bit
- tif
- TIFF 2D-image input/output support
Recognized file extensions: .TIF, .TIFF, .tif,
.tiff
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32
bit
- vista
- a 2dimage io plugin for vista images
Recognized file extensions: .-, .V, .VISTA, .v,
.vista
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit,
unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit,
floating point 64 bit
PLUGINS: 2dvf/io¶
- datapool
- Virtual IO to and from the internal data pool
Recognized file extensions: .@
- exr
- a 2dvf io plugin for OpenEXR vfs
Recognized file extensions: .EXR, .exr
Supported element types:
unsigned 32 bit, floating point 32 bit
- vista
- a 2d vector field io plugin for vista
Recognized file extensions: .V, .VF, .v, .vf
Supported element types:
floating point 32 bit
EXAMPLE¶
Register image test.v to image ref.v and write the deformation vector field regfield.v. Start registration at the smallest size above 16 pixel.
mia-2dfluid -i test.v -r ref.v -o regfield.v -s 16
AUTHOR(s)¶
Gert Wollny
COPYRIGHT¶
This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.
| v2.4.7 | USER COMMANDS |