NAME¶samtools.pl - helper script for SAMtools
SYNOPSIS¶samtools.pl <command> [<arguments>]
DESCRIPTION¶helper script for SAMtools
- varFilter filtering SNPs and short indels
- pileup2fq generate fastq from `pileup -c'
- showALEN print alignment length (ALEN) following CIGAR
AUTHOR¶THe software was written by Heng Li <email@example.com>
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
|December 2015||samtools.pl 1.2|