table of contents
other versions
- unstable 1.0+dfsg-3
| RUN_TIPP_TOOL.PY(1) | User Commands | RUN_TIPP_TOOL.PY(1) |
NAME¶
run_tipp_tool.py - helper tool to convert a classification file into a profile
DESCRIPTION¶
usage: run_tipp_tool.py [-h] [-g GENE] [-o OUTPUT] [-d OUTPUT_DIR] [-i INPUT] [-t THRESHOLD]
Performs various tools for TIPP.
optional arguments:¶
- -h, --help
- show this help message and exit
- -g GENE, --gene GENE
- use GENE's reference package
- -o OUTPUT, --output OUTPUT
- output files with prefix OUTPUT. [default: output]
- -d OUTPUT_DIR, --outdir OUTPUT_DIR
- output to OUTPUT_DIR directory. full-path required. [default: .]
- -i INPUT, --input INPUT
- input file. full-path required. (_classification.txt file from running run_tipp.py)
- -t THRESHOLD, --threshold THRESHOLD
- Threshold for classification [default: 0.95]
SEE ALSO¶
run_tipp.py(1)
| September 2021 | run_tipp_tool.py |