.TH "CSG_PARTIAL_RDF" "1" " csg_partial_rdf User Manual" "VOTCA Development Team"
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.SH NAME
.PP
\fBcsg_partial_rdf\fP \- Part of the VOTCA package


.SH SYNOPSIS
.PP
\fBcsg_partial_rdf\fP [OPTIONS]
.PP
\fBcsg_partial_rdf\fP [\-\-help]


.SH DESCRIPTION
.PP

Calculate spatially confined rdfs




.SH OPTIONS
.PP

Allowed options:

  -h [ --help ]             display this help and exit
  --verbose                 be loud and noisy
  --verbose1                be very loud and noisy
  -v [ --verbose2 ]         be extremly loud and noisy
  --top arg                 atomistic topology file

Mapping options:

  --cg arg                  [OPTIONAL] coarse graining mapping and bond 
                          definitions
                            (xml-file). If no file is given, program acts on 
                          original trajectory
  --map-ignore arg          list of molecules to ignore if mapping is done 
                          separated by ;

Specific options:

  --options arg             options file defining the rdfs
  --subvolume_radius arg  Rdf calc. in spherical subvolume of this radius (from
                          center of box)
  --do-vol-corr           Correct for subvolume truncation in rdf
  --write-every arg        (UNIMPLEMENTED) write after every block of this 
                          length, if --blocking   is set, the averages are 
                          cleared after every output
  --do-blocks               write output for blocking analysis

Threading options:

  --nt arg (=1)             number of threads

Trajectory options:

  --trj arg                 atomistic trajectory file
  --begin arg (=0)          skip frames before this time (only works for 
                          Gromacs files)
  --first-frame arg (=0)    start with this frame
  --nframes arg             process the given number of frames

.SH AUTHORS
.PP
Written and maintained by the VOTCA Development Team <devs@votca.org>


.SH COPYRIGHT
.PP

Copyright 2009\-2021 The VOTCA Development Team (http://www.votca.org)

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this  file
except in compliance with the License.  You may obtain a copy of the License at

       http://www.apache.org/licenses/LICENSE-2.0

Unless  required by applicable law or agreed to in writing, software distributed under the
License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY  KIND,
either  express  or  implied.   See  the  License  for  the  specific  language  governing
permissions and limitations under the License.