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CONSENSUSFINDER(1)   CONSENSUSFINDER(1)

NAME

consensusfinder - consensus finder

SYNOPSIS

consensusFinder input_fasta_file [options]

OPTIONS

-l

pattern length

-p

p-value for finding the significant strings

-d

delta to find the relevant strings

-s

starting position

-e

ending position

-m

no. of mismatches to consider while finding neighbours

-c

string to consider for analysis

-n

specify the number of consensus patterns to store

-t

print the histogram

AUTHORS

AUGUSTUS was written by M. Stanke, O. Keller, S. König, L. Gerischer and L. Romoth.

ADDITIONAL DOCUMENTATION

An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.