| HILIVE-BUILD(1) | User Commands | HILIVE-BUILD(1) |
NAME¶
hilive-build - Index creation tool for HiLive - Realtime Alignment of Illumina Reads
SYNOPSIS¶
hilive-build [options]
OPTIONS¶
GENERAL OPTIONS:¶
- -h [ --help ]
- Print this help message and exit
- -l [ --license ]
- Print licensing information and exit
REQUIRED OPTIONS:¶
- -i [ --input ] arg
- Reference genome(s) in (multi-)FASTA format. [REQUIRED]
- -o [ --out-prefix ] arg
- Output file prefix. Several files with the same prefix will be created. [REQUIRED]
OTHER OPTIONS:¶
- --do-not-convert-spaces
- Do not convert all spaces in reference ids to underscores [Default: converting is on]
- --trim-after-space
- Trim all reference ids after first space [Default: false]
EXAMPLE¶
hilive-build --input hg19.fa --out-prefix ./index/hg19
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| October 2019 | hilive-build 2.0a |