'\" t
.\"     Title: kmc_tools-union
.\"    Author: [see the "AUTHOR(S)" section]
.\" Generator: Asciidoctor 2.0.20
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "KMC_TOOLS\-UNION" "1" "" "\ \&" "\ \&"
.ie \n(.g .ds Aq \(aq
.el       .ds Aq '
.ss \n[.ss] 0
.nh
.ad l
.de URL
\fI\\$2\fP <\\$1>\\$3
..
.als MTO URL
.if \n[.g] \{\
.  mso www.tmac
.  am URL
.    ad l
.  .
.  am MTO
.    ad l
.  .
.  LINKSTYLE blue R < >
.\}
.SH "NAME"
kmc_tools-union \- calculate union of two KMC databases
.SH "SYNOPSIS"
.sp
\fBkmc_tools union\fP <input1 [input1_params]> <input2 [input2_params]> <output [output_params]>
.SH "DESCRIPTION"
.sp
The output database will contain all k\-mers present in both input sets. For the same k\-mers in the first and the second input, the counter in the output is equal to the sum from both inputs.
.SH "OPTIONS"
.sp
For each input there are additional parameters:
.sp
\fB\-ci<value>\fP
.RS 4
exclude k\-mers occurring less than <value> times
.RE
.sp
\fB\-cx<value>\fP
.RS 4
exclude k\-mers occurring more of than <value> times
.RE
.sp
For output there are additional parameters:
.sp
\fB\-ci<value>\fP
.RS 4
exclude k\-mers occurring less than <value> times
.RE
.sp
\fB\-cx<value>\fP
.RS 4
exclude k\-mers occurring more of than <value> times
.RE
.sp
\fB\-cs<value>\fP
.RS 4
maximal value of a counter
.RE
.SH "EXAMPLE"
.sp
kmc \-k28 file1.fastq kmers1 tmp
kmc \-k28 file2.fastq kmers2 tmp
kmc_tools union kmers1 \-ci3 \-cx70000 kmers2 kmers1_kmers2_union \-cs65536
.SH "AUTHOR"
.sp
KMC was originally written by:
.sp
.RS 4
.ie n \{\
\h'-04'\(bu\h'+03'\c
.\}
.el \{\
.  sp -1
.  IP \(bu 2.3
.\}
Sebastian Deorowicz (\c
.MTO "sebastian.deorowicz\(atpolsl.pl" "" ")"
.RE
.sp
.RS 4
.ie n \{\
\h'-04'\(bu\h'+03'\c
.\}
.el \{\
.  sp -1
.  IP \(bu 2.3
.\}
Marek Kokot
.RE
.sp
.RS 4
.ie n \{\
\h'-04'\(bu\h'+03'\c
.\}
.el \{\
.  sp -1
.  IP \(bu 2.3
.\}
Szymon Grabowski
.RE
.sp
.RS 4
.ie n \{\
\h'-04'\(bu\h'+03'\c
.\}
.el \{\
.  sp -1
.  IP \(bu 2.3
.\}
Agnieszka Debudaj\-Grabysz
.RE
.SH "COPYING"
.sp
KMC is a free software distributed under GNU GPL3 licence for academic,
research, and commercial use.