.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.46.4.
.TH MAUVEALIGNER "1" "April 2015" "mauvealigner 1.2.0+4713" "User Commands"
.SH NAME
addUnalignedIntervals - part of mauveAligner package
.br
alignmentProjector - part of mauveAligner package
.br
backbone_global_to_local - part of mauveAligner package
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bbAnalyze - part of mauveAligner package
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createBackboneMFA - part of mauveAligner package
.br
getAlignmentWindows - part of mauveAligner package
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getOrthologList - part of mauveAligner package
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makeBadgerMatrix - part of mauveAligner package
.br
mauveToXMFA - part of mauveAligner package
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mfa2xmfa - part of mauveAligner package
.br
projectAndStrip - part of mauveAligner package
.br
randomGeneSample - part of mauveAligner package
.br
scoreAlignment - part of mauveAligner package
.br
stripGapColumns - part of mauveAligner package
.br
stripSubsetLCBs - part of mauveAligner package
.br
toGrimmFormat - part of mauveAligner package
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toMultiFastA - part of mauveAligner package
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toRawSequence - part of mauveAligner package
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uniqueMerCount - part of mauveAligner package
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uniquifyTrees - part of mauveAligner package
.br
xmfa2maf - part of mauveAligner package
.SH DESCRIPTION
These tools belong to the mauveAligner package. They are not explicitly
documented but are printing a synopsis line which is repeated here.
.PP
\fBaddUnalignedIntervals\fR \fI