NAME¶

run-singularity - launch a Singularity containers with a runscript

DESCRIPTION¶

Run the user-defined default command within a container

OPTIONS¶

--add-caps string

a comma separated capability list to add

--allow-setuid

allow setuid binaries in container (root only)

--app string

set an application to run inside a container

--apply-cgroups string

apply cgroups from file for container processes (root only)

-B, --bind strings

a user-bind path specification. spec has the format src[:dest[:opts]], where src and dest are outside and inside paths. If dest is not given, it is set equal to src. Mount options ('opts') may be specified as 'ro' (read-only) or 'rw' (read/write, which is the default). Multiple bind paths can be given by a comma separated list.

--blkio-weight int

Block IO relative weight in range 10-1000, 0 to disable

--blkio-weight-device strings

Device specific block IO relative weight

-e, --cleanenv

clean environment before running container

--compat

apply settings for increased OCI/Docker compatibility. Infers --containall, --no-init, --no-umask, --no-eval, --writable-tmpfs.

-c, --contain

use minimal /dev and empty other directories (e.g. /tmp and $HOME) instead of sharing filesystems from your host

-C, --containall

contain not only file systems, but also PID, IPC, and environment

--cpu-shares int

CPU shares for container (default -1)

--cpus string

Number of CPUs available to container

--cpuset-cpus string

List of host CPUs available to container

--cpuset-mems string

List of host memory nodes available to container

--disable-cache

dont use cache, and dont create cache

--dns string

list of DNS server separated by commas to add in resolv.conf

--docker-login

login to a Docker Repository interactively

--drop-caps string

a comma separated capability list to drop

--env stringToString

pass environment variable to contained process (default [])

--env-file string

pass environment variables from file to contained process

-f, --fakeroot

run container in new user namespace as uid 0

--fusemount strings

A FUSE filesystem mount specification of the form '<type>:<fuse command> <mountpoint>' - where <type> is 'container' or 'host', specifying where the mount will be performed ('container-daemon' or 'host-daemon' will run the FUSE process detached). <fuse command> is the path to the FUSE executable, plus options for the mount. <mountpoint> is the location in the container to which the FUSE mount will be attached. E.g. 'container:sshfs 10.0.0.1:/ /sshfs'. Implies --pid.

-h, --help

help for run

-H, --home string

a home directory specification. spec can either be a src path or src:dest pair. src is the source path of the home directory outside the container and dest overrides the home directory within the container. (default "/home/buildd")

--hostname string

set container hostname

-i, --ipc

run container in a new IPC namespace

--keep-privs

let root user keep privileges in container (root only)

--memory string

Memory limit in bytes

--memory-reservation string

Memory soft limit in bytes

--memory-swap string

Swap limit, use -1 for unlimited swap

--mount stringArray

a mount specification e.g. 'type=bind,source=/opt,destination=/hostopt'.

-n, --net

run container in a new network namespace (sets up a bridge network interface by default)

--network string

specify desired network type separated by commas, each network will bring up a dedicated interface inside container (default "bridge")

--network-args strings

specify network arguments to pass to CNI plugins

--no-eval

do not shell evaluate env vars or OCI container CMD/ENTRYPOINT/ARGS

--no-home

do NOT mount users home directory if /home is not the current working directory

--no-https

use http instead of https for docker:// oras:// and library://<hostname>/... URIs

--no-init

do NOT start shim process with --pid

--no-mount strings

disable one or more 'mount xxx' options set in singularity.conf, specify absolute destination path to disable a 'bind path' entry

--no-privs

drop all privileges from root user in container)

--no-umask

do not propagate umask to the container, set default 0022 umask

--nv

enable Nvidia support

--nvccli

use nvidia-container-cli for GPU setup (experimental)

--oom-kill-disable

Disable OOM killer

-o, --overlay strings

use an overlayFS image for persistent data storage or as read-only layer of container

--passphrase

prompt for an encryption passphrase

--pem-path string

enter an path to a PEM formatted RSA key for an encrypted container

-p, --pid

run container in a new PID namespace

--pids-limit int

Limit number of container PIDs, use -1 for unlimited

--pwd string

initial working directory for payload process inside the container

--rocm

enable experimental Rocm support

-S, --scratch strings

include a scratch directory within the container that is linked to a temporary dir (use -W to force location)

--security strings

enable security features (SELinux, Apparmor, Seccomp)

--sif-fuse

attempt FUSE mount of SIF (unprivileged / user namespace only) (experimental)

-u, --userns

run container in a new user namespace, allowing Singularity to run completely unprivileged on recent kernels. This disables some features of Singularity, for example it only works with sandbox images.

--uts

run container in a new UTS namespace

--vm

enable VM support

--vm-cpu string

number of CPU cores to allocate to Virtual Machine (implies --vm) (default "1")

--vm-err

enable attaching stderr from VM

--vm-ip string

IP Address to assign for container usage. Defaults to DHCP within bridge network. (default "dhcp")

--vm-ram string

amount of RAM in MiB to allocate to Virtual Machine (implies --vm) (default "1024")

-W, --workdir string

working directory to be used for /tmp, /var/tmp and $HOME (if -c/--contain was also used)

-w, --writable

by default all Singularity containers are available as read only. This option makes the file system accessible as read/write.

--writable-tmpfs

makes the file system accessible as read-write with non persistent data (with overlay support only)

EXAMPLES¶

# Here we see that the runscript prints "Hello world: " $ singularity exec /tmp/debian.sif cat /singularity #!/bin/sh echo "Hello world: "

# It runs with our inputs when we run the image $ singularity run /tmp/debian.sif one two three Hello world: one two three

# Note that this does the same thing $ ./tmp/debian.sif one two three

For additional help or support, please visit https://www.sylabs.io/docs/