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CONTIG_TO_CHR_COORDS(1) User Commands CONTIG_TO_CHR_COORDS(1)

NAME

contig_to_chr_coords - tophat component taking NCBI seq_contig file and maps contig coords

DESCRIPTION

contig_to_chr_coords: Takes the NCBI seq_contig file and maps contig coords to whole chromosome coords in a GTF, GFF, or BED file

contig_to_chr_coords.py <format_flag> <seq_contig.md> <junctions.bed|transcripts.gff|transcripts.gtf>
for help use --help
November 2018 contig_to_chr_coords 2.1.1+dfsg1-2+b1