.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.15.
.TH BAMHEADRG.PY "1" "June 2020" "bamheadrg.py 0.0.1+git20170413.ccd079d" "User Commands"
.SH NAME
bamheadrg.py \- Inject readgroup info
.SH SYNOPSIS
.B bamheadrg.py
[\-h] [\-r READGROUP] \fB\-d\fR DONOR [\-S] [recipient]
.SH DESCRIPTION
Inject readgroup info
.SH OPTIONS
.SS "positional arguments:"
.TP
recipient
SAM file to inject header lines into. If '\-' or absent then defaults to stdin.
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-r\fR READGROUP, \fB\-\-readgroup\fR READGROUP
Read group(s) to extract (comma separated)
.TP
\fB\-d\fR DONOR, \fB\-\-donor\fR DONOR
Donor BAM/SAM file to extract read group info
.TP
\fB\-S\fR, \fB\-\-donor_is_sam\fR
Donor file is SAM
.SH AUTHOR
 This manpage was written by Andreas Tille for the Debian distribution and
 can be used for any other usage of the program.