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.IX Title "BP_RUN_NEIGHBOR 1p"
.TH BP_RUN_NEIGHBOR 1p 2024-12-01 "perl v5.40.0" "User Contributed Perl Documentation"
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.SH NAME
run_neighbor \- run Phylip's 'neighbor' program through Bioperl
.SH SYNOPSIS
.IX Header "SYNOPSIS"
run_neighbor [\-i inputfile] [\-o outfilename]
.SH DESCRIPTION
.IX Header "DESCRIPTION"
Provide an matrix file to run neighbor on.  File should be named of
the forma file.matrix or file.protdist (the ending doesn't matter, but
the program expects a file in the form of (\eS+)\e.(\eS+).
.PP
This will run the application 'neighbor' to build a 
Neighbor-Joining tree from a protein distance matrix.
.SH AUTHOR
.IX Header "AUTHOR"
Jason Stajich, jason-AT-open-bio-DOT-org