.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.13.
.TH SGA2GFF.PL "1" "March 2020" "sga2gff.pl 1.5.5" "User Commands"
.SH NAME
sga2gff.pl \- Convert SGA format into GFF format
.SH DESCRIPTION
.IP
sga2gff.pl [options] <SGA file>
.IP
where options are:
.TP
\fB\-h\fR|\-\-help
Show this stuff
.TP
\fB\-\-db\fR <path>
Use <path> to locate Chrom Id Storable File 'chro_idx.nstorage'
.TP
\fB\-l\fR|\-\-taglen <taglen>
Set Read length <taglen>
.TP
\fB\-x\fR
Expand SGA lines into multiple GFF lines
.TP
\fB\-e\fR|\-\-ext <ext_flag>
Use SGA 6th field to set GFF feature field
and store SGA feature into GFF source field
.SH AUTHOR
 This manpage was written by Andreas Tille for the Debian distribution and
 can be used for any other usage of the program.