.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.13.
.TH QUAL_TRIM.PY "1" "March 2020" "qual_trim.py 1.1" "User Commands"
.SH NAME
qual_trim.py \- Perform quality trimming for single-end reads.
.SH DESCRIPTION
usage: qual_trim.py [\-h] [\-b BASE] [\-p PROB] [\-q SCORE] [\-l BP] [\-\-illumina5]
.TP
[\-\-solexa]
FASTQ
.PP
Perform quality trimming for single\-end reads.
.SS "positional arguments:"
.TP
FASTQ
including stdin or compressed file {zip,gz,tar,bz}
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-b\fR BASE
ASCII\-encoded quality offset, e.g. 33 or 64 (default: 33)
.TP
\fB\-p\fR PROB
error probability cutoff (default: 0.1)
.TP
\fB\-q\fR SCORE
quality score cutoff (default: '\-p 0.1')
.TP
\fB\-l\fR BP
minimum read length in bp (default: 16)
.TP
\fB\-\-illumina5\fR
Illumina 1.5+ encoding marked with 'B'
.TP
\fB\-\-solexa\fR
Solexa encoding
.SH AUTHOR
 This manpage was written by Andreas Tille for the Debian distribution and
 can be used for any other usage of the program.