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.IX Title "QLOB 1"
.TH QLOB 1 2024-11-09 "perl v5.40.0" "User Contributed Perl Documentation"
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.SH NAME
qlob.pl \-\- run quick mursaki compare
.SH SYNOPSIS
.IX Header "SYNOPSIS"
qlob.pl [options] {genome list...}
.PP
qlob is a frontend to murasaki (through qsub if it's available).
It automatically generates an output name for you based on the input files,
sets a more reasonable memory limit, runs the job, and generates dot-plot
outputs.
.PP
In addition to the standard Murasaki options (see murasaki \-\-help),
qlob supports some some options of its own:
.PP
.Vb 8
\& Options:
\&  \-P           uses an old pattern of 11111100100001111100000100101111
\&  \-\-target=<hostname>  requests the job be run on hostname
\&  \-n|\-\-name    name for the job (allows overwriting of old output)
\&  \-m|\-\-mem     specifies a memory requirement to pass to qsub (default 4gb)
\&  \-\-mpi=N      use MPI across N machines (sets ppn=4 also)
\&  \-\-myrinet    require myrinet nodes
\&  \-\-kogfile=<file> Run filter.pl to score alignment using <file>
.Ve
.SH DESCRIPTION
.IX Header "DESCRIPTION"
\&\fBThis program\fR runs several sequences through murasaki.
When run on an hpc machine it submits the job via qsub.