.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.15.
.TH PARSELOG.PY "1" "May 2020" "ParseLog.py 0.6.0" "User Commands"
.SH NAME
ParseLog.py \- Parses records in the console log of pRESTO modules
.SH DESCRIPTION
usage: ParseLog.py [\-\-version] [\-h] [\-o OUT_FILES [OUT_FILES ...]]
.IP
[\-\-outdir OUT_DIR] [\-\-outname OUT_NAME]
[\-\-delim DELIMITER DELIMITER DELIMITER] \fB\-l\fR RECORD_FILES
[RECORD_FILES ...] \fB\-f\fR FIELDS [FIELDS ...]
.PP
Parses records in the console log of pRESTO modules
.SS "help:"
.TP
\fB\-\-version\fR
show program's version number and exit
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.SS "standard arguments:"
.TP
\fB\-o\fR OUT_FILES [OUT_FILES ...]
Explicit output file name(s). Note, this argument
cannot be used with the \fB\-\-failed\fR, \fB\-\-outdir\fR, or
\fB\-\-outname\fR arguments. If unspecified, then the output
filename will be based on the input filename(s).
(default: None)
.TP
\fB\-\-outdir\fR OUT_DIR
Specify to changes the output directory to the
location specified. The input file directory is used
if this is not specified. (default: None)
.TP
\fB\-\-outname\fR OUT_NAME
Changes the prefix of the successfully processed
output file to the string specified. May not be
specified with multiple input files. (default: None)
.TP
\fB\-\-delim\fR DELIMITER DELIMITER DELIMITER
A list of the three delimiters that separate
annotation blocks, field names and values, and values
within a field, respectively. (default: ('|', '=',
\&','))
.SS "parsing arguments:"
.TP
\fB\-l\fR RECORD_FILES [RECORD_FILES ...]
List of log files to parse. (default: None)
.TP
\fB\-f\fR FIELDS [FIELDS ...]
List of fields to collect. The sequence identifier may
be specified using the hidden field name "ID".
(default: None)
.SS "output files:"
.IP
table
.IP
tab delimited table of the selected annotations.
.SS "output annotation fields:"
.IP
<user defined>
.IP
annotation fields specified by the \fB\-f\fR argument.
.SH AUTHOR
 This manpage was written by Andreas Tille for the Debian distribution and
 can be used for any other usage of the program.