.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.3.
.TH TFF_CONVERT_DSI_STUDIO.PY "1" "July 2024" "tff_convert_dsi_studio.py 0.3" "User Commands"
.SH NAME
tff_convert_dsi_studio.py \- fix DSI-Studio TRK file
.SH DESCRIPTION
usage: tff_convert_dsi_studio.py [\-h] [\-\-remove_invalid | \fB\-\-keep_invalid]\fR [\-f]
.IP
IN_DSI_TRACTOGRAM IN_DSI_FA OUT_TRACTOGRAM
.PP
This script is made to fix DSI\-Studio TRK file (unknown space/convention) to
make it compatible with TrackVis, MI\-Brain, Dipy Horizon (Stateful Tractogram).
.PP
The script either make it match with an anatomy from DSI\-Studio.
.PP
This script was tested on various datasets and worked on all of them. However,
always verify the results and if a specific case does not work. Open an issue
on the Scilpy GitHub repository.
.PP
WARNING: This script is still experimental, DSI\-Studio evolves quickly and
results may vary depending on the data itself as well as DSI\-studio version.
.SS "positional arguments:"
.TP
IN_DSI_TRACTOGRAM
Path of the input tractogram file from DSI studio (.trk).
.TP
IN_DSI_FA
Path of the input FA from DSI Studio (.nii.gz).
.TP
OUT_TRACTOGRAM
Path of the output tractogram file.
.SS "options:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-remove_invalid\fR
Remove the streamlines landing out of the bounding box.
.TP
\fB\-\-keep_invalid\fR
Keep the streamlines landing out of the bounding box.
.TP
\fB\-f\fR
Force overwriting of the output files.