.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH PERMUTEFLIPIMAGEORIENTATIONAXES "1" "September 2017" "PermuteFlipImageOrientationAxes 2.1.0" "User Commands"
.SH NAME
PermuteFlipImageOrientationAxes \- part of ANTS registration suite
.SH DESCRIPTION
Usage:
PermuteFlipImageOrientationAxes ImageDimension  inputImageFile  outputImageFile xperm yperm {zperm}  xflip yflip {zflip}  {FlipAboutOrigin}
.TP
for 3D:
PermuteFlipImageOrientationAxes 3  in.nii out.nii   2 0 1  1 1 1
.IP
would map z=>x, x=>y, y=>z and flip each
for 2D:  PermuteFlipImageOrientationAxes 2  in.nii out.nii   1 0  1 0
would map x=>y, y=>x and flip x
.IP
0 1 2 for permute factors gives no axis permutation
1 2 0 maps y to x,  z to y and x to z
the flip values are boolean \-  0 1 0 would flip the y\-axis only
.IP
The FlipAboutOrigin boolean lets you flip about the coordinate set in the origin