.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH ANTSMOTIONCORRSTATS "1" "September 2017" "antsMotionCorrStats 2.1.0" "User Commands"
.SH NAME
antsMotionCorrStats \- part of ANTS registration suite
.SH DESCRIPTION
.SS "COMMAND:"
.IP
antsMotionCorrStats
.IP
antsMotionCorrStats \- create summary measures of the parameters that are output
by antsMotionCorr. Currently only works for linear transforms. Outputs the mean
and max displacements for the voxels within a provided mask, at each time point.
By default the displacements are relative to the reference space, but the
framewise option may be used to provide displacements between consecutive time
points
.SS "OPTIONS:"
.HP
\fB\-x\fR, \fB\-\-mask\fR mask.nii.gz
.IP
Mask image \- compute displacements within mask.
.HP
\fB\-m\fR, \fB\-\-moco\fR MOCOparams.csv
.IP
motion correction parameters from antsMotionCorr.
.HP
\fB\-o\fR, \fB\-\-output\fR corrected.csv
.IP
Specify the output file
.HP
\fB\-t\fR, \fB\-\-transform\fR
.IP
Specify the index for a 3D transform to output
.HP
\fB\-f\fR, \fB\-\-framewise\fR
.IP
do framewise summarywise stats
<VALUES>: 0
.HP
\fB\-s\fR, \fB\-\-spatial\-map\fR
.IP
output image of displacement magnitude
.HP
\fB\-d\fR, \fB\-\-timeseries\-displacement\fR
.IP
output 4d time\-series image of displacement magnitude
.HP
\fB\-h\fR
.IP
Print the help menu (short version).
<VALUES>: 0
.HP
\fB\-\-help\fR
.IP
Print the help menu.
<VALUES>: 1, 0