.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.3.
.TH FASTAQ-SCAFFOLDS_TO_CONTIGS "1" "December 2023" "fastaq_scaffolds_to_contigs 3.17.0" "User Commands"
.SH NAME
fastaq_scaffolds_to_contigs \- Creates a file of contigs from a file of scaffolds
.SH DESCRIPTION
usage: fastaq_scaffolds_to_contigs [options] <infile> <outfile>
.PP
Creates a file of contigs from a file of scaffolds \- i.e. breaks at every gap
in the input
.SS "positional arguments:"
.TP
infile
Name of input file
.TP
outfile
Name of output contigs file
.SS "options:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-number_contigs\fR
Use this to enumerate contig names 1,2,3,... within each
scaffold