NAME¶

Bio::Graphics::Browser2::PluginSet -- A set of plugins

SYNOPSIS¶

None. Used internally by gbrowse & gbrowse_img.

METHODS¶

$plugin_set = Bio::Graphics::Browser2::PluginSet->new($config,$page_settings,@search_path)

Initialize plugins according to the configuration, page settings and the plugin search path. Returns an object.

$plugin_set->configure($database)

Configure the plugins given the database.

$plugin_set->annotate($segment,$feature_files,$rel2abs)

Run plugin annotations on the $segment, adding the resulting feature files to the hash ref in $feature_files ({track_name=>$feature_list}). The $rel2abs argument holds a coordinate mapper callback, but is currently unused.

SEE ALSO¶

Bio::Graphics::Browser2

AUTHOR¶

Lincoln Stein <lstein@cshl.org>.

Copyright (c) 2005 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.