.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.48.1.
.TH LEFSE_PLOT_RES.PY "1" "September 2021" "lefse_plot_res.py 1.1.2" "User Commands"
.SH NAME
lefse_plot_res.py \- determine features of organisms, clades, taxonomic units, genes
.SH DESCRIPTION
usage: lefse_plot_res.py [\-h] [\-\-feature_font_size FEATURE_FONT_SIZE]
.TP
[\-\-format {png,svg,pdf}] [\-\-dpi DPI] [\-\-title TITLE]
[\-\-title_font_size TITLE_FONT_SIZE]
[\-\-class_legend_font_size CLASS_LEGEND_FONT_SIZE]
[\-\-width WIDTH] [\-\-height HEIGHT] [\-\-left_space LS]
[\-\-right_space RS] [\-\-orientation {h,v}]
[\-\-autoscale {0,1}] [\-\-background_color {k,w}]
[\-\-subclades N_SCL]
[\-\-max_feature_len MAX_FEATURE_LEN]
[\-\-all_feats ALL_FEATS] [\-\-otu_only]
[\-\-report_features]
INPUT_FILE OUTPUT_FILE
.PP
Plot results
.SS "positional arguments:"
.TP
INPUT_FILE
tab delimited input file
.TP
OUTPUT_FILE
the file for the output image
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-feature_font_size\fR FEATURE_FONT_SIZE
the file for the output image
.TP
\fB\-\-format\fR {png,svg,pdf}
the format for the output file
.HP
\fB\-\-dpi\fR DPI
.HP
\fB\-\-title\fR TITLE
.HP
\fB\-\-title_font_size\fR TITLE_FONT_SIZE
.HP
\fB\-\-class_legend_font_size\fR CLASS_LEGEND_FONT_SIZE
.HP
\fB\-\-width\fR WIDTH
.TP
\fB\-\-height\fR HEIGHT
only for vertical histograms
.HP
\fB\-\-left_space\fR LS
.HP
\fB\-\-right_space\fR RS
.HP
\fB\-\-orientation\fR {h,v}
.HP
\fB\-\-autoscale\fR {0,1}
.TP
\fB\-\-background_color\fR {k,w}
set the color of the background
.TP
\fB\-\-subclades\fR N_SCL
number of label levels to be displayed (starting from
the leaves, \fB\-1\fR means all the levels, 1 is default )
.TP
\fB\-\-max_feature_len\fR MAX_FEATURE_LEN
Maximum length of feature strings (def 60)
.HP
\fB\-\-all_feats\fR ALL_FEATS
.TP
\fB\-\-otu_only\fR
Plot only species resolved OTUs (as opposed to all
levels)
.TP
\fB\-\-report_features\fR
Report important features to STDOUT
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.