Scroll to navigation

PEGASUS-TC-CONVERT(1) Pegasus Manual PEGASUS-TC-CONVERT(1)

NAME

pegasus-tc-converter - A client to convert transformation catalog from one format to another format.

SYNOPSIS

pegasus-tc-converter [-Dproperty=value...] [-v] [-q] [-V] [-h]


                     [-I fmt] [-O fmt]


                     [-N dbusername] [-P dbpassword] [-U dburl] [-H dbhost]


                     -i infile[,infile,...] -o outfile

DESCRIPTION

The tc-convert program is used to convert the transformation catalog from one format to another.

Currently, the following formats of transformation catalog exist:

Text

This is a easy to read multi line textual format.

A sample entry in this format looks as follows:

tr example::keg:1.0 {


        site isi {


        profile env "JAVA_HOME" "/bin/java.1.6"


        pfn "/path/to/keg"


        arch  "x86"


        os    "linux"


        osrelease "fc"


        osversion "4"


        type "installed"


    }
}

File

This is a tuple based format which contains 6 columns. 

RESOURCE  LFN  PFN  TYPE  SYSINFO  PROFILES

A sample entry in this format looks as follows

isi  example::keg:1.0  /path/to/keg  INSTALLED  INTEL32::LINUX:fc_4:  env::JAVA_HOME="/bin/java.1.6"

Database

Only MySQL is supported for the time being.

OPTIONS

-Dproperty=value

The -D option allows an experienced user to override certain properties which influence the program execution, among them the default location of the user’s properties file and the PEGASUS_HOME location. One may set several CLI properties by giving this option multiple times.

The -D option(s) must be the first option on the command line. CLI properties take precedence over the file-based properties of the same key.

-I fmt, --iformat fmt

The input format of the input files. Valid values for the input format are: File, Text, and Database.

-O fmt --oformat fmt The output format of the output file. Valid values for the output format are: File, Text, and Database.

-i infile[,infile,...] --input infile[,infile,...] The comma separated list of input files that need to be converted to a file in the format specified by the --oformat option.

-o outfile, --output outfile

The output file to which the output needs to be written out to.

Other Options

-N dbusername, --db-user-name dbusername

The database user name.

-P dbpassword, --db-user-pwd dbpassword

The database user password.

-U dburl, --db-url dburl

The database url.

-H dbhost, --db-host dbhost

The database host.

-v, --verbose

Increases the verbosity of messages about what is going on. By default, all FATAL ERROR, ERROR , CONSOLE and WARNINGS messages are logged.

-q, --quiet

Decreases the verbosity of messages about what is going on. By default, all FATAL ERROR, ERROR , CONSOLE and WARNINGS messages are logged.

-V, --version

Displays the current version number of the Pegasus Workflow Planner Software.

-h, --help

Displays all the options to the pegasus-tc-converter command.

EXAMPLE

Text to file format conversion

pegasus-tc-converter -i tc.data -I File -o tc.txt  -O Text -v

File to Database(new) format conversion

pegasus-tc-converter -i tc.data -I File -N mysql_user -P mysql_pwd -U jdbc:mysql://localhost:3306/tc -H localhost -O Database -v

Database (username, password, host, url specified in properties file) to text format conversion

pegasus-tc-converter -I Database -o tc.txt -O Text -vvvvv

AUTHORS

Prasanth Thomas

Pegasus Team http://pegasus.isi.edu

11/09/2018 Pegasus 4.4.0