.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.15.
.TH TIDDIT.PY "1" "May 2020" "TIDDIT.py 2.11.0" "User Commands"
.SH NAME
TIDDIT.py \- structural variant calling
.SH SYNOPSIS
.B TIDDIT.py
[\-\-sv] [\-\-cov]
.SH DESCRIPTION
TIDDIT is a tool to used to identify chromosomal rearrangements using
Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter-
chromosomal translocations, deletions, tandem-duplications and
inversions, using supplementary alignments as well as discordant pairs.
.P
TIDDIT has two analysis modules. The sv mode, which is used to search
for structural variants. And the cov mode that analyse the read depth of
a bam file and generates a coverage report.
.SH OPTIONS
.TP
\fB\-\-sv\fR
call structural variation
.TP
\fB\-\-cov\fR
generate a coverage bed file
.SH AUTHOR
 This manpage was written by Andreas Tille for the Debian distribution and
 can be used for any other usage of the program.