NAME¶

bustools - manual page for bustools 0.42.0

SYNOPSIS¶

bustools <CMD> [arguments] ..

DESCRIPTION¶

bustools 0.42.0

Where <CMD> can be one of:

sort Sort a BUS file by barcodes and UMIs correct Error correct a BUS file umicorrect Error correct the UMIs in a BUS file count Generate count matrices from a BUS file inspect Produce a report summarizing a BUS file whitelist Generate a whitelist from a BUS file project Project a BUS file to gene sets capture Capture records from a BUS file merge Merge bus files from same experiment text Convert a binary BUS file to a tab-delimited text file extract Extract FASTQ reads correspnding to reads in BUS file predict Correct the count matrix using prediction of unseen species collapse Turn BUS files into a BUG file clusterhist Create UMI histograms per cluster linker Remove section of barcodes in BUS files compress Compress a BUS file inflate Decompress a BUSZ (compressed BUS) file version Prints version number cite Prints citation information

Running bustools <CMD> without arguments prints usage information for <CMD>

Usage: bustools <CMD> [arguments] ..

Where <CMD> can be one of:

sort Sort a BUS file by barcodes and UMIs correct Error correct a BUS file umicorrect Error correct the UMIs in a BUS file count Generate count matrices from a BUS file inspect Produce a report summarizing a BUS file whitelist Generate a whitelist from a BUS file project Project a BUS file to gene sets capture Capture records from a BUS file merge Merge bus files from same experiment text Convert a binary BUS file to a tab-delimited text file extract Extract FASTQ reads correspnding to reads in BUS file predict Correct the count matrix using prediction of unseen species collapse Turn BUS files into a BUG file clusterhist Create UMI histograms per cluster linker Remove section of barcodes in BUS files compress Compress a BUS file inflate Decompress a BUSZ (compressed BUS) file version Prints version number cite Prints citation information

Running bustools <CMD> without arguments prints usage information for <CMD>

SEE ALSO¶

The full documentation for bustools is maintained as a Texinfo manual. If the info and bustools programs are properly installed at your site, the command

info bustools

should give you access to the complete manual.