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FETCH_ALL_REFSEQ_BACTERIAL_GENOMES(1) User Commands FETCH_ALL_REFSEQ_BACTERIAL_GENOMES(1)

NAME

fetch_all_refseq_bacterial_genomes - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

DESCRIPTION

USAGE:

fetch_all_refseq_bacterial_genomes -o DIR

DESCRIPTION:

Downloads all bacterial RefSeq sequences form NCBI in GenBank format. The --min and --max options can be used to restrict the size of the returned sequences.

REQUIRED ARGUMENTS:

-o, --output DIR

The output directory to contain the downloaded GenBank files.

OPTIONAL ARGUMENTS:

-m, --min INTEGER

Records with a sequence length shorter than this value will be ignored.

-x, --max INTEGER

Records with a sequence length longer than this value will be ignored.

-h, --help

Show this message.

EXAMPLE:

fetch_all_refseq_bacterial_genomes -o my_project/comparison_genomes

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

August 2018 fetch_all_refseq_bacterial_genomes 20170919