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FETCH_REFSEQ_BACTERIAL_GENOMES_BY_NAME(1) User Commands FETCH_REFSEQ_BACTERIAL_GENOMES_BY_NAME(1)

NAME

fetch_refseq_bacterial_genomes_by_name - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

DESCRIPTION

USAGE:

fetch_refseq_bacterial_genomes_by_name -n STRING -o DIR

DESCRIPTION:

Downloads a GenBank record using a partial or complete bacterial species name. The --min and --max options can be used to restrict the size of the returned sequences.

REQUIRED ARGUMENTS:

-n, --name STRING

Complete or partial name of the bacterial species.

-m, --min INTEGER

Records with a sequence length shorter than this value will be ignored.

-x, --max INTEGER

Records with a sequence length longer than this value will be ignored.

-o, --output DIR

The output directory to download the GenBank file into.

OPTIONAL ARGUMENTS:

-h, --help

Show this message.

EXAMPLE:

fetch_refseq_bacterial_genomes_by_name -n 'Escherichia*' -o my_project/comparison_genomes

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

August 2018 fetch_refseq_bacterial_genomes_by_name 20170919