table of contents
| CSB-CSFRAG(1) | User Commands | CSB-CSFRAG(1) |
NAME¶
csb-csfrag - build a dynamic library of analogous fragments
DESCRIPTION¶
usage: csb-csfrag [-h] -d DATABASE -s SHIFTS [-w WINDOW] [-t TOP] [-c CPU]
- [-v VERBOSITY] [-o OUTPUT] [-f] QUERY
CSfrag: build a dynamic library of analogous fragments, given a list of assigned chemical shifts.
positional arguments:¶
- QUERY
- query sequence (FASTA file)
optional arguments:¶
- -h, --help
- show this help message and exit
- -d DATABASE, --database DATABASE
- PDBS25 database directory (containing PDBS25cs.scs)
- -s SHIFTS, --shifts SHIFTS
- assigned chemical shifts table (NMR STAR file fragment)
- -w WINDOW, --window WINDOW
- sliding window size (default=8)
- -t TOP, --top TOP
- maximum number per starting position (default=25)
- -c CPU, --cpu CPU
- maximum degree of parallelism (default=4)
- -v VERBOSITY, --verbosity VERBOSITY
- verbosity level (default=1)
- -o OUTPUT, --output OUTPUT
- output directory (default=.)
- -f, --filtered-map
- make an additional filtered fragment map of centroids (default=False)
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| November 2017 | csb-csfrag 1.2.5 |