NAME¶

dcmquant - Convert DICOM color images to palette color

SYNOPSIS¶

dcmquant [options] dcmfile-in dcmfile-out

DESCRIPTION¶

The dcmquant utility reads a DICOM color image, computes a palette color look-up table of the desired size for this image (based on the median cut algorithm published by Paul Heckbert) and converts the color image into a DICOM palette color image.

PARAMETERS¶

dcmfile-in   DICOM input filename to be converted
dcmfile-out  DICOM output filename to be written

OPTIONS¶

  -h   --help


         print this help text and exit


       --version


         print version information and exit


       --arguments


         print expanded command line arguments


  -q   --quiet


         quiet mode, print no warnings and errors


  -v   --verbose


         verbose mode, print processing details


  -d   --debug


         debug mode, print debug information


  -ll  --log-level  [l]evel: string constant


         (fatal, error, warn, info, debug, trace)


         use level l for the logger


  -lc  --log-config  [f]ilename: string


         use config file f for the logger

input file format:


  +f   --read-file


         read file format or data set (default)


  +fo  --read-file-only


         read file format only


  -f   --read-dataset


         read data set without file meta information
input transfer syntax:


  -t=  --read-xfer-auto


         use TS recognition (default)


  -td  --read-xfer-detect


         ignore TS specified in the file meta header


  -te  --read-xfer-little


         read with explicit VR little endian TS


  -tb  --read-xfer-big


         read with explicit VR big endian TS


  -ti  --read-xfer-implicit


         read with implicit VR little endian TS

frame selection:


  +F   --frame  [n]umber: integer


         select specified frame


  +Fa  --all-frames


         select all frames (default)
compatibility:


  +Mp  --accept-palettes


         accept incorrect palette attribute tags


         (0028,111x) and (0028,121x)
median cut dimension selection:


  +Dr  --mc-dimension-rgb


         max dimension from RGB range (default)


  +Dl  --mc-dimension-lum


         max dimension from luminance
median cut representative color selection:


  +Cb  --mc-color-avgbox


         average colors in box (default)


  +Cp  --mc-color-avgpixel


         average pixels in box


  +Cc  --mc-color-center


         select center of box
color palette value representation:


  +pw  --write-ow


         write Palette LUT as OW (default)


  +pu  --write-us


         write Palette LUT as US (retired)
color palette creation:


  +pe  --lut-entries-word


         write Palette LUT with 16-bit entries


  +pf  --floyd-steinberg


         use Floyd-Steinberg error diffusion


  +pc  --colors  number of colors: 2..65536 (default 256)


         number of colors to quantize to
SOP Class UID:


  +cd  --class-default


         keep SOP Class UID (default)


  +cs  --class-sc


         convert to Secondary Capture Image


         (implies --uid-always)
SOP Instance UID:


  +ua  --uid-always


         always assign new UID (default)


  +un  --uid-never


         never assign new UID

output file format:


  +F   --write-file


         write file format (default)


  -F   --write-dataset


         write data set without file meta information
output transfer syntax:


  +t=  --write-xfer-same


         write with same TS as input (default)


  +te  --write-xfer-little


         write with explicit VR little endian TS


  +tb  --write-xfer-big


         write with explicit VR big endian TS


  +ti  --write-xfer-implicit


         write with implicit VR little endian TS
post-1993 value representations:


  +u   --enable-new-vr


         enable support for new VRs (UN/UT) (default)


  -u   --disable-new-vr


         disable support for new VRs, convert to OB
group length encoding:


  +g=  --group-length-recalc


         recalculate group lengths if present (default)


  +g   --group-length-create


         always write with group length elements


  -g   --group-length-remove


         always write without group length elements
length encoding in sequences and items:


  +e   --length-explicit


         write with explicit lengths (default)


  -e   --length-undefined


         write with undefined lengths
data set trailing padding (not with --write-dataset):


  -p=  --padding-retain


         do not change padding


         (default if not --write-dataset)


  -p   --padding-off


         no padding (implicit if --write-dataset)


  +p   --padding-create  [f]ile-pad [i]tem-pad: integer


         align file on multiple of f bytes and items on


         multiple of i bytes

LOGGING¶

The level of logging output of the various command line tools and underlying libraries can be specified by the user. By default, only errors and warnings are written to the standard error stream. Using option --verbose also informational messages like processing details are reported. Option --debug can be used to get more details on the internal activity, e.g. for debugging purposes. Other logging levels can be selected using option --log-level. In --quiet mode only fatal errors are reported. In such very severe error events, the application will usually terminate. For more details on the different logging levels, see documentation of module 'oflog'.

In case the logging output should be written to file (optionally with logfile rotation), to syslog (Unix) or the event log (Windows) option --log-config can be used. This configuration file also allows for directing only certain messages to a particular output stream and for filtering certain messages based on the module or application where they are generated. An example configuration file is provided in <etcdir>/logger.cfg.

COMMAND LINE¶

All command line tools use the following notation for parameters: square brackets enclose optional values (0-1), three trailing dots indicate that multiple values are allowed (1-n), a combination of both means 0 to n values.

Command line options are distinguished from parameters by a leading '+' or '-' sign, respectively. Usually, order and position of command line options are arbitrary (i.e. they can appear anywhere). However, if options are mutually exclusive the rightmost appearance is used. This behavior conforms to the standard evaluation rules of common Unix shells.

In addition, one or more command files can be specified using an '@' sign as a prefix to the filename (e.g. @command.txt). Such a command argument is replaced by the content of the corresponding text file (multiple whitespaces are treated as a single separator unless they appear between two quotation marks) prior to any further evaluation. Please note that a command file cannot contain another command file. This simple but effective approach allows one to summarize common combinations of options/parameters and avoids longish and confusing command lines (an example is provided in file <datadir>/dumppat.txt).

ENVIRONMENT¶

The dcmquant utility will attempt to load DICOM data dictionaries specified in the DCMDICTPATH environment variable. By default, i.e. if the DCMDICTPATH environment variable is not set, the file <datadir>/dicom.dic will be loaded unless the dictionary is built into the application (default for Windows).

The default behavior should be preferred and the DCMDICTPATH environment variable only used when alternative data dictionaries are required. The DCMDICTPATH environment variable has the same format as the Unix shell PATH variable in that a colon (':') separates entries. On Windows systems, a semicolon (';') is used as a separator. The data dictionary code will attempt to load each file specified in the DCMDICTPATH environment variable. It is an error if no data dictionary can be loaded.

COPYRIGHT¶

Copyright (C) 2001-2022 by OFFIS e.V., Escherweg 2, 26121 Oldenburg, Germany.