Scroll to navigation

FASTAQ-TO_FASTA(1) User Commands FASTAQ-TO_FASTA(1)

NAME

fastaq_to_fasta - Converts a variety of input formats to nicely formatted FASTA format

DESCRIPTION

usage: fastaq_to_fasta [options] <infile> <outfile>

Converts a variety of input formats to nicely formatted FASTA format

positional arguments:

Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK, Phylip
Name of output file

options:

show this help message and exit
Number of bases on each sequence line of output file. Set to zero for no linebreaks in sequences [60]
Remove everything after first whitespace in every sequence name
Die if any of the output sequence names are not unique
October 2022 fastaq_to_fasta 3.17.0