NAME¶

Bio::Graphics::Browser2::PluginSet -- A set of plugins

SYNOPSIS¶

None. Used internally by gbrowse & gbrowse_img.

METHODS¶

$plugin_set = Bio::Graphics::Browser2::PluginSet->new($config,$state,@search_path)

Initialize plugins according to the configuration, page settings and the plugin search path. Returns an object.

$plugin_set->configure($database)

Configure the plugins given the database.

$plugin_set->annotate($segment,$feature_files,$rel2abs)

Run plugin annotations on the $segment, adding the resulting feature files to the hash ref in $feature_files ({track_name=>$feature_list}). The $rel2abs argument holds a coordinate mapper callback, but is currently unused.

SEE ALSO¶

Bio::Graphics::Browser

AUTHOR¶

Lincoln Stein <lstein@cshl.org>.

Copyright (c) 2005 Cold Spring Harbor Laboratory

This package and its accompanying libraries is free software; you can redistribute it and/or modify it under the terms of the GPL (either version 1, or at your option, any later version) or the Artistic License 2.0. Refer to LICENSE for the full license text. In addition, please see DISCLAIMER.txt for disclaimers of warranty.