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GT-MATSTAT(1) GenomeTools Manual GT-MATSTAT(1)

NAME

gt-matstat - Compute matching statistics.

SYNOPSIS

gt matstat [options ...] -query queryfile [...]

DESCRIPTION

-fmi [string]

specify fmindex (default: undefined)

-esa [string]

specify suffix array (default: undefined)

-pck [string]

specify packed index (default: undefined)

-query

specify queryfiles

-min [value]

only output length if >= given minimum length (default: 0)

-max [value]

only output length if ⇐ given maximum length (default: 0)

-output

set output flags (sequence, querypos, subjectpos)

-help

display help and exit

-version

display version information and exit

ADDITIONAL INFORMATION

For detailed information, please refer to the manual of matstat.

REPORTING BUGS

Report bugs to <kurtz@zbh.uni-hamburg.de>.

11/28/2022 GenomeTools 1.6.2