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GT-SEQUNIQ(1) GenomeTools Manual GT-SEQUNIQ(1)

NAME

gt-sequniq - Filter out repeated sequences in given sequence files.

SYNOPSIS

gt sequniq [option ...] sequence_file [...]

DESCRIPTION

-rev [yes|no]

also filter out sequences whose reverse complement is identical to a sequence already output (default: no)

-v [yes|no]

be verbose (default: no)

-width [value]

set output width for FASTA sequence printing (0 disables formatting) (default: 0)

-o [filename]

redirect output to specified file (default: undefined)

-gzip [yes|no]

write gzip compressed output file (default: no)

-bzip2 [yes|no]

write bzip2 compressed output file (default: no)

-force [yes|no]

force writing to output file (default: no)

-help

display help and exit

-version

display version information and exit

The tool will only remove identical duplicates of sequences, not substrings contained within other sequences.

REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.

11/28/2022 GenomeTools 1.6.2