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GT-STAT(1) GenomeTools Manual GT-STAT(1)

NAME

gt-stat - Show statistics about features contained in GFF3 files.

SYNOPSIS

gt stat [option ...] [GFF3_file ...]

DESCRIPTION

-genelengthdistri [yes|no]

show gene length distribution (default: no)

-genescoredistri [yes|no]

show gene score distribution (default: no)

-exonlengthdistri [yes|no]

show exon length distribution (default: no)

-exonnumberdistri [yes|no]

show exon number distribution (default: no)

-intronlengthdistri [yes|no]

show intron length distribution (default: no)

-cdslengthdistri [yes|no]

show CDS length distribution (measured in amino acids) (default: no)

-source [yes|no]

show the set of used source tags (column 2 in regular GFF3 lines) (default: no)

-addintrons [yes|no]

add intron features between existing exon features (before computing stats) (default: no)

-v [yes|no]

be verbose (default: no)

-o [filename]

redirect output to specified file (default: undefined)

-gzip [yes|no]

write gzip compressed output file (default: no)

-bzip2 [yes|no]

write bzip2 compressed output file (default: no)

-force [yes|no]

force writing to output file (default: no)

-help

display help and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.

11/28/2022 GenomeTools 1.6.2