NAME¶

hts-nim-tools - manual page for hts-nim-tools

DESCRIPTION¶

hts-nim utility programs. version: 0.2.0

??? bam-filter

: filter BAM/CRAM/SAM files with a simple expression language

??? copy-number-sampler : sample BAM regions with a probability given in a BED file (for creating CN truth-sets) ??? count-reads : count BAM/CRAM reads in regions given in a BED file ??? vcf-check : check regions of a VCF against a background for missing chunks

hts-nim utility programs. version: 0.2.0

??? bam-filter

: filter BAM/CRAM/SAM files with a simple expression language

??? copy-number-sampler : sample BAM regions with a probability given in a BED file (for creating CN truth-sets) ??? count-reads : count BAM/CRAM reads in regions given in a BED file ??? vcf-check : check regions of a VCF against a background for missing chunks