table of contents
| LEFSE_PLOT_RES.PY(1) | User Commands | LEFSE_PLOT_RES.PY(1) |
NAME¶
lefse_plot_res.py - determine features of organisms, clades, taxonomic units, genes
DESCRIPTION¶
usage: lefse_plot_res.py [-h] [--feature_font_size FEATURE_FONT_SIZE]
- [--format {png,svg,pdf}] [--dpi DPI] [--title TITLE]
- [--title_font_size TITLE_FONT_SIZE] [--class_legend_font_size CLASS_LEGEND_FONT_SIZE] [--width WIDTH] [--height HEIGHT] [--left_space LS] [--right_space RS] [--orientation {h,v}] [--autoscale {0,1}] [--background_color {k,w}] [--subclades N_SCL] [--max_feature_len MAX_FEATURE_LEN] [--all_feats ALL_FEATS] [--otu_only] [--report_features] INPUT_FILE OUTPUT_FILE
Plot results
positional arguments:¶
- INPUT_FILE
- tab delimited input file
- OUTPUT_FILE
- the file for the output image
optional arguments:¶
- -h, --help
- show this help message and exit
- --feature_font_size FEATURE_FONT_SIZE
- the file for the output image
- --format {png,svg,pdf}
- the format for the output file
--dpi DPI
--title TITLE
--title_font_size TITLE_FONT_SIZE
--class_legend_font_size CLASS_LEGEND_FONT_SIZE
--width WIDTH
- --height HEIGHT
- only for vertical histograms
--left_space LS
--right_space RS
--orientation {h,v}
--autoscale {0,1}
- --background_color {k,w}
- set the color of the background
- --subclades N_SCL
- number of label levels to be dislayed (starting from the leaves, -1 means all the levels, 1 is default )
- --max_feature_len MAX_FEATURE_LEN
- Maximum length of feature strings (def 60)
--all_feats ALL_FEATS
- --otu_only
- Plot only species resolved OTUs (as opposed to all levels)
- --report_features
- Report important features to STDOUT
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| September 2021 | lefse_plot_res.py 1.1.2 |