table of contents
| RG::Reprof(3pm) | User Contributed Perl Documentation | RG::Reprof(3pm) |
NAME¶
RG::Reprof::Reprof - protein secondary structure and accessibility predictor
SYNOPSIS¶
use RG::Reprof::Reprof;
DESCRIPTION¶
See module commented source for further details.
Methods¶
- OBJ RG::Reprof::Reprof->new( model_dir => PATH )
- Default model_dir: /tmp/lkajan/root/share/reprof.
Returns new instance of RG::Reprof::Reprof.
- int $OBJ->run( input_file => PATH, out_file => PATH, mutation_file => PATH, specific_models => hashref, output_func => coderef )
- out_file may be a directory.
- mutation_file may be undefined.
- specific_models may be undefined.
- This is a hash of model and feature files with 'model_name' keys like:
{ 'fub_model' => '/path/to/model_file', 'fub_features' => '/path/to/features_file' }Check the module source for the list for model names.
- void output_func( out_file, sec_pred, acc_pred, sequence ) - function to call when output is ready.
- If undefined, the built-in write_output() function is called that prints results to one or more files. The following positional parameters are passed to this function:
AUTHOR¶
Original version by Peter Hoenigschmid <hoenigschmid@rostlab.org> and Burkhard Rost.
Some perl module work and documentation by Laszlo Kajan <lkajan@rostlab.org>.
SEE ALSO¶
| 2022-01-18 | perl v5.32.1 |