pattern¶
Title : pattern
Usage : my $pattern = $sitepair->pattern(); # gets the pattern
# sets the pattern to $pwm
Function: gets the pattern object associated with the site pair
Returns : pattern object, here TFBS::Matrix::PWM object
Args : none (get-only method)
GFF¶
Title : GFF
Usage : print $site->GFF();
: print $site->GFF($gff_formatter)
Function: returns a "standard" multiline GFF string
Returns : a string (multiline, newline terminated)
Args : a $gff_formatter function reference (optional)
site1 =head2 site2¶
Title : site1
site2
Usage : my $site1 = $sitepair->site1();
Function: Returns individual TFBS::Site objects, from the site pair
Returns : a TFBS::Site
Args : none
