| mia-2dmyocard-segment(1) | General Commands Manual | mia-2dmyocard-segment(1) |
NAME¶
mia-2dmyocard-segment - Work in progress
SYNOPSIS¶
mia-2dmyocard-segment -i <in-file> -o <out-file> [options]
DESCRIPTION¶
mia-2dmyocard-segment This program is work in progress
OPTIONS¶
File-IO¶
- -i --in-file=(required, input); string
- input perfusion data set
- -o --out-file=(output, required); io
- output myocardial mask
For supported file types see PLUGINS:2dimage/io - -f --save-features=(output); string
- save ICA features to files with this name base
Help & Info¶
- -V --verbose=warning
- verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
trace ‐ Function call trace
debug ‐ Debug output
info ‐ Low level messages
message ‐ Normal messages
warning ‐ Warnings
fail ‐ Report test failures
error ‐ Report errors
fatal ‐ Report only fatal errors
- --copyright
- print copyright information
- -h --help
- print this help
- -? --usage
- print a short help
- --version
- print the version number and exit
ICA¶
- --fastica=internal
- FastICA implementationto be used
For supported plugins see PLUGINS:fastica/implementation - -C --components=0
- ICA components 0 = automatic estimation testing 4 and 5
- --normalize
- normalized ICs
- --no-meanstrip
- don't strip the mean from the mixing curves
- -k --skip=2
- skip images at the beginning of the series as they are of other modalities
- -m --max-ica-iter=400
- maximum number of iterations in ICA
Processing¶
- --threads=-1
- Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
PLUGINS: 2dimage/io¶
- bmp
- BMP 2D-image input/output support. The plug-in supports reading and writing of binary images and 8-bit gray scale images. read-only support is provided for 4-bit gray scale images. The color table is ignored and the pixel values are taken as literal gray scale values.
Recognized file extensions: .BMP, .bmp
Supported element types:
binary data, unsigned 8 bit
- datapool
- Virtual IO to and from the internal data pool
Recognized file extensions: .@
- dicom
- 2D image io for DICOM
Recognized file extensions: .DCM, .dcm
Supported element types:
signed 16 bit, unsigned 16 bit
- exr
- a 2dimage io plugin for OpenEXR images
Recognized file extensions: .EXR, .exr
Supported element types:
unsigned 32 bit, floating point 32 bit
- jpg
- a 2dimage io plugin for jpeg gray scale images
Recognized file extensions: .JPEG, .JPG, .jpeg,
.jpg
Supported element types:
unsigned 8 bit
- png
- a 2dimage io plugin for png images
Recognized file extensions: .PNG, .png
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit
- raw
- RAW 2D-image output support
Recognized file extensions: .RAW, .raw
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit,
unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit,
floating point 64 bit
- tif
- TIFF 2D-image input/output support
Recognized file extensions: .TIF, .TIFF, .tif,
.tiff
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32
bit
- vista
- a 2dimage io plugin for vista images
Recognized file extensions: .-, .V, .VISTA, .v,
.vista
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit,
unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit,
floating point 64 bit
PLUGINS: fastica/implementation¶
- internal
- This is the MIA implementation of the FastICA algorithm.
(no parameters)
- itpp
- This is the IT++ implementation of the FastICA algorithm.
(no parameters)
EXAMPLE¶
Example
mia-2dmyocard-segment Example
AUTHOR(s)¶
Gert Wollny
COPYRIGHT¶
This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.
| v2.4.7 | USER COMMANDS |