table of contents
| GFFUTILS-CLI_PARENTS(1) | User Commands | GFFUTILS-CLI_PARENTS(1) |
NAME¶
gffutils-cli_parents - Fetch parents from the database according to ID
DESCRIPTION¶
usage: gffutils-cli parents [-h] [--limit LIMIT] [--exclude EXCLUDE]
- [--exclude-self]
- db [ids]
- Fetch parents from the database according to ID.
positional arguments:¶
- db
- Database to use. If a GFF or GTF file is provided instead for this argument, a database will be created for you. This can take some time (several minutes), so it's best to create one ahead of time.
- ids
- Comma-separated list of IDs. These IDs, along with their parents, will be returned (subject to --limit and --exclude). If none provided, use all exons in the database (default: -)
options:¶
- -h, --help
- show this help message and exit
- --limit LIMIT
- Feature type (string), or level (integer). No parents below this level will be returned (default: -)
- --exclude EXCLUDE
- Comma-separated list of featuretypes to filter out (like grep -v) (default: -)
- --exclude-self
- Use this to suppress reporting the IDs you've provided. (default: False)
| January 2023 | gffutils-cli parents 0.11.1 |