table of contents
| GFFUTILS-CLI_SANITIZE(1) | User Commands | GFFUTILS-CLI_SANITIZE(1) |
NAME¶
gffutils-cli_sanitize - Sanitize a GFF file
DESCRIPTION¶
usage: gffutils-cli sanitize [-h] [--in-memory] [--in-place] filename
- Sanitize a GFF file. Might get merged with clean feature later.
- Cleans and adds useful annotations to a GFF file:
- - Ensures that start > end in all entries - Adds an entry id (eid) to each entry to make files grep-able
- Outputs result to stdout unless asked to sanitize in place.
positional arguments:¶
- filename
- GFF or GTF file to use (or GFF database.)
options:¶
- -h, --help
- show this help message and exit
- --in-memory
- Load GFF into memory for processing. (default: True)
- --in-place
- Sanitize file in-place: overwrites current file with sanitized version. (default: False)
| January 2023 | gffutils-cli sanitize 0.11.1 |