NAME¶

Bio::Roary::IterativeCdhit - Run CDhit iteratively with reducing thresholds, removing full clusters each time

VERSION¶

version 3.13.0

SYNOPSIS¶

Run CDhit iteratively with reducing thresholds, removing full clusters each time
use Bio::Roary::IterativeCdhit;

   my $obj = Bio::Roary::IterativeCdhit->new(
     output_cd_hit_filename   => 'output_cd_hit_filename.fa',
     output_combined_filename => 'output_combined_filename.fa',
     number_of_input_files     => 5,
     output_filtered_clustered_fasta= > 'output_filtered_clustered_fasta.fa',
   );
   $obj->run;

AUTHOR¶

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE¶

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007