table of contents
FIX-TRINITY-OUTPUT(1) | User Commands | FIX-TRINITY-OUTPUT(1) |
NAME¶
fix-trinity-output - Fix output fastq files from Trinity
DESCRIPTION¶
Trinity outputs fastq files that have been 'corrected'
Unfortunately these files are no longer properly paired and therefore can't be used in most aligners such as bowtie2 and snap
This script attempts to fix that and produce 2 properly paired fastq files and a fastq file containing single reads
OPTIONS¶
- --left, -l <s>:
- fastq file of left reads
- --right, -r <s>:
- fastq file of right reads
- --output, -o <s>:
- output prefix
- --help, -h:
- Show this message
February 2019 | fix-trinity-output 1.0.0 |